Stem-loop cpi-mir-101-2

Accession

MI0029448

Description

Chrysemys picta cpi-mir-101-2 precursor miRNA

Sequence

525125 reads, 5524.0 reads per million, 12 experiments

augaacuguccuuuuuCGGUUAUCAUGGUACCGGUGCUGUauacgugaaagGUACAGUACUGUGAUAACUGAAGaaugauggugccauca
(((.((((((.((((((((((((((((((((..(((((............))))).)))))))))))))))))))).))))))..)))..

Structure

--   -a      c                    CG     GUaua 
  aug  acuguc uuuuuCGGUUAUCAUGGUAC  GUGCU     c
  |||  |||||| ||||||||||||||||||||  |||||      
  uac  ugguag aaGAAGUCAAUAGUGUCAUG  CAUGg     g
ac   cg      u                    -A     aaagu 

Annotation confidence High

Genome context

chr6: 13378767-13378856 [+]

Mature cpi-miR-101-2-5p

• Accession: MIMAT0037718
• Description: Chrysemys picta cpi-miR-101-2-5p mature miRNA
• Sequence: 17 - CGGUUAUCAUGGUACCGGUGCUGU - 40
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-101-3p

• Accession: MIMAT0037717
• Description: Chrysemys picta cpi-miR-101-3p mature miRNA
• Sequence: 52 - GUACAGUACUGUGAUAACUGAAG - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196