Stem-loop cpi-mir-103-1

Accession

MI0029449

Description

Chrysemys picta cpi-mir-103-1 precursor miRNA

Sequence

708061 reads, 7621.0 reads per million, 12 experiments

ggaaugucucauugucuucGGCUUCUUUACAGUGCUGCCUUGUugcauauggaucaAGCAGCAUUGUACAGGGCUAUGaaggcauuaagucuugc
.....(.((...(((((((((((.((.(((((((((((.(((.(.(....).).)))))))))))))).))))))..)))))))...)).)....

Structure

ggaau u  cau       --    U  U           C   U g a 
     g cu   ugucuuc  GGCU CU UACAGUGCUGC UUG u c u
     | ||   |||||||  |||| || ||||||||||| ||| | |  
     c ga   acggaaG  UCGG GA AUGUUACGACG Aac a g a
-cguu u  auu       UA    -  C           -   u g u 

Annotation confidence High

Genome context

KK088198.1: 11071784-11071878 [-]

Mature cpi-miR-103-1-5p

• Accession: MIMAT0059148
• Description: Chrysemys picta cpi-miR-103-1-5p mature miRNA
• Sequence: 20 - GGCUUCUUUACAGUGCUGCCUUGU - 43
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-103-3p

• Accession: MIMAT0037719
• Description: Chrysemys picta cpi-miR-103-3p mature miRNA
• Sequence: 57 - AGCAGCAUUGUACAGGGCUAUG - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196