Stem-loop cpi-mir-107

Accession

MI0029453

Description

Chrysemys picta cpi-mir-107 precursor miRNA

Sequence

315883 reads, 3294.0 reads per million, 12 experiments

uucuuuuugcuuucAGCUUCUUUACAGUGUUGCCUUGuggcauggaguucaAGCAGCAUUGUACAGGGCUAUcaaagcaucgagaguu
(((((..((((((.((((.((.(((((((((((.(((.(((.....))))))))))))))))).))))))...))))))..)))))..

Structure

--     uu      --c    U  U           C   u   a 
  uucuu  ugcuuu   AGCU CU UACAGUGUUGC UUG ggc u
  |||||  ||||||   |||| || ||||||||||| ||| ||| g
  gagag  acgaaa   UCGG GA AUGUUACGACG Aac uug g
uu     cu      cUA    -  C           -   -   a 

Annotation confidence High

Genome context

KK082966.1: 3528708-3528795 [-]

Mature cpi-miR-107-5p

• Accession: MIMAT0059150
• Description: Chrysemys picta cpi-miR-107-5p mature miRNA
• Sequence: 15 - AGCUUCUUUACAGUGUUGCCUUG - 37
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-107-3p

• Accession: MIMAT0037723
• Description: Chrysemys picta cpi-miR-107-3p mature miRNA
• Sequence: 52 - AGCAGCAUUGUACAGGGCUAU - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196