Stem-loop cpi-mir-122

Accession

MI0029454

Description

Chrysemys picta cpi-mir-122 precursor miRNA

Sequence

722 reads, 8.0 reads per million, 12 experiments

cugccagagcuguGGAGUGUGACAAUGGUGUUUGuguccaaucuaucaAACGCCAUUAUCACACUAAAUagcuacuguuagaua
(((.(((((((((..(((((((.(((((((((((............))))))))))).)))))))..)))))).))).)))...

Structure

---   c   -      GG       C           ugucc 
   cug cag agcugu  AGUGUGA AAUGGUGUUUG     a
   ||| ||| ||||||  ||||||| |||||||||||      
   gau guc ucgaUA  UCACACU UUACCGCAAac     a
aua   u   a      AA       A           uaucu 

Annotation confidence High

Genome context

KK088217.1: 528232-528315 [+]

Mature cpi-miR-122-5p

• Accession: MIMAT0037724
• Description: Chrysemys picta cpi-miR-122-5p mature miRNA
• Sequence: 14 - GGAGUGUGACAAUGGUGUUUG - 34
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-122-3p

• Accession: MIMAT0037725
• Description: Chrysemys picta cpi-miR-122-3p mature miRNA
• Sequence: 49 - AACGCCAUUAUCACACUAAAU - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196