miRBase entry: cpi-mir-124-1

Stem-loop cpi-mir-124-1


Accession
MI0029455
Description
Chrysemys picta cpi-mir-124-1 precursor miRNA


Sequence

349003 reads, 3728.0 reads per million, 12 experiments
ccucucucCGUGUUCACAGCGGACCUUGAUUuaaauguccauacaauUAAGGCACGCGGUGAAUGCCaagaacgaggcugaau
(((((((..((((((((.(((..((((((((.............))))))))..))).))))))))..)))..))))......

Structure
------    --   cC        A   GA        uaaau 
      ccuc  ucu  GUGUUCAC GCG  CCUUGAUU     g
      ||||  |||  |||||||| |||  ||||||||     u
      ggag  aga  CGUAAGUG CGC  GGAAUuaa     c
uaaguc    ca   aC        G   AC        cauac 


Annotation confidence High
Do you think this miRNA is real?

Genome context
AHGY02146791.1: 117-199 [-]

Database links

Mature cpi-miR-124-5p

Accession MIMAT0037726
Description Chrysemys picta cpi-miR-124-5p mature miRNA
Sequence 9 - CGUGUUCACAGCGGACCUUGAUU - 31
Evidence experimental
Illumina [1]

Mature cpi-miR-124-3p

Accession MIMAT0037727
Description Chrysemys picta cpi-miR-124-3p mature miRNA
Sequence 48 - UAAGGCACGCGGUGAAUGCC - 67
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196