Stem-loop cpi-mir-124-2

Accession

MI0029456

Description

Chrysemys picta cpi-mir-124-2 precursor miRNA

Sequence

348973 reads, 3727.0 reads per million, 12 experiments

cgaggcucugacucucCGUGUUCACAGCGGACCUUGAUUuaaugucauacaauUAAGGCACGCGGUGAAUGCCaagagcggagccugaagc
..((((((((.((((..((((((((.(((..((((((((...........))))))))..))).))))))))..)))))))))))).....

Structure

---cg        a    cC        A   GA        uaau 
     aggcucug cucu  GUGUUCAC GCG  CCUUGAUU    g
     |||||||| ||||  |||||||| |||  ||||||||    u
     uccgaggc gaga  CGUAAGUG CGC  GGAAUuaa    c
cgaag        -    aC        G   AC        caua 

Annotation confidence High

Genome context

chr2: 65680050-65680140 [-]

Mature cpi-miR-124-5p

• Accession: MIMAT0037726
• Description: Chrysemys picta cpi-miR-124-5p mature miRNA
• Sequence: 17 - CGUGUUCACAGCGGACCUUGAUU - 39
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-124-3p

• Accession: MIMAT0037727
• Description: Chrysemys picta cpi-miR-124-3p mature miRNA
• Sequence: 54 - UAAGGCACGCGGUGAAUGCC - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196