Stem-loop cpi-mir-124-3

Accession

MI0029457

Description

Chrysemys picta cpi-mir-124-3 precursor miRNA

Sequence

348976 reads, 3727.0 reads per million, 12 experiments

cgagccccucucugCGUGUUCACAGCGGACCUUGAUUuaauguccauacaauUAAGGCACGCGGUGAAUGCCaagagaggagccu
...((.(((((((..((((((((.(((..((((((((............))))))))..))).))))))))..))))))).))..

Structure

cga  c       gC        A   GA        uaaug 
   gc ccucucu  GUGUUCAC GCG  CCUUGAUU     u
   || |||||||  |||||||| |||  ||||||||      
   cg ggagaga  CGUAAGUG CGC  GGAAUuaa     c
-uc  a       aC        G   AC        cauac 

Annotation confidence High

Genome context

KK088178.1: 4667893-4667977 [+]

Mature cpi-miR-124-5p

• Accession: MIMAT0037726
• Description: Chrysemys picta cpi-miR-124-5p mature miRNA
• Sequence: 15 - CGUGUUCACAGCGGACCUUGAUU - 37
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-124-3p

• Accession: MIMAT0037727
• Description: Chrysemys picta cpi-miR-124-3p mature miRNA
• Sequence: 53 - UAAGGCACGCGGUGAAUGCC - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196