Stem-loop cpi-mir-124-4

Accession

MI0029458

Description

Chrysemys picta cpi-mir-124-4 precursor miRNA

Sequence

349157 reads, 3729.0 reads per million, 12 experiments

cgcucggcuuccgcuuuuCGUGUUCACAGCGGACCUUGAUUuaauuucauacaauUAAGGCACGCGGUGAAUGCCaagagagaagccggacu
...((((((((..(((((.((((((((.(((..((((((((...........))))))))..))).)))))))).))))).))))))))...

Structure

cgc        cg     C        A   GA        uaau 
   ucggcuuc  cuuuu GUGUUCAC GCG  CCUUGAUU    u
   ||||||||  ||||| |||||||| |||  ||||||||    u
   ggccgaag  gagaa CGUAAGUG CGC  GGAAUuaa    c
uca        -a     C        G   AC        caua 

Annotation confidence High

Genome context

KK082935.1: 897991-898082 [+]

Mature cpi-miR-124-5p

• Accession: MIMAT0037726
• Description: Chrysemys picta cpi-miR-124-5p mature miRNA
• Sequence: 19 - CGUGUUCACAGCGGACCUUGAUU - 41
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-124-3p

• Accession: MIMAT0037727
• Description: Chrysemys picta cpi-miR-124-3p mature miRNA
• Sequence: 56 - UAAGGCACGCGGUGAAUGCC - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196