Stem-loop cpi-mir-125b-1

Accession

MI0029460

Description

Chrysemys picta cpi-mir-125b-1 precursor miRNA

Sequence

1781491 reads, 19824.0 reads per million, 12 experiments

uguugcgccccucucaaUCCCUGAGACCCUAACUUGUGAUGuuuagcuuuuaaauccACGGGUUAGGCUCUUGGGAGCUgugaguugugcuuugacau
((((((((..(((.((.((((.((((.(((((((((((..(((((.....))))).))))))))))).))))))))..)).)))..))))...)))).

Structure

-    ---    cc   u  -a    U    C           AU     g 
 uguu   gcgc  cuc ca  UCCC GAGA CCUAACUUGUG  Guuua c
 ||||   ||||  ||| ||  |||| |||| |||||||||||  ||||| u
 acag   cgug  gag gU  AGGG UUCU GGAUUGGGCAc  uaaau u
u    uuu    uu   u  CG    -    C           -c     u 

Annotation confidence High

Genome context

KK088232.1: 2305474-2305571 [-]

Mature cpi-miR-125b-5p

• Accession: MIMAT0037730
• Description: Chrysemys picta cpi-miR-125b-5p mature miRNA
• Sequence: 18 - UCCCUGAGACCCUAACUUGUGAUG - 41
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-125b-3p

• Accession: MIMAT0037731
• Description: Chrysemys picta cpi-miR-125b-3p mature miRNA
• Sequence: 58 - ACGGGUUAGGCUCUUGGGAGCU - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196