Stem-loop cpi-mir-128-2

Accession

MI0029464

Description

Chrysemys picta cpi-mir-128-2 precursor miRNA

Sequence

5594764 reads, 61586.0 reads per million, 12 experiments

agcgaugggcaguuggaagGGGGGCCGUUACACUGUAAGAgagugaguagcaggucUCACAGUGAACCGGUCUCUUUUccuacugugucaugcca
.((.(((((((((.(((((((((((((...((((((..((((.(........).))))))))))...))))))))))))).))))).))))))..

Structure

-a  g    -     u             UUA      AA    g gag 
  gc augg gcagu ggaagGGGGGCCG   CACUGU  GAga u   u
  || |||| ||||| |||||||||||||   ||||||  |||| |    
  cg uacu uguca ccUUUUCUCUGGC   GUGACA  CUcu g   a
ac  -    g     u             CAA      --    g acg 

Annotation confidence High

Genome context

KK082982.1: 1504736-1504830 [+]

Mature cpi-miR-128-2-5p

• Accession: MIMAT0037737
• Description: Chrysemys picta cpi-miR-128-2-5p mature miRNA
• Sequence: 20 - GGGGGCCGUUACACUGUAAGA - 40
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-128-3p

• Accession: MIMAT0037736
• Description: Chrysemys picta cpi-miR-128-3p mature miRNA
• Sequence: 57 - UCACAGUGAACCGGUCUCUUUU - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196