Stem-loop cpi-mir-129-1

Accession

MI0029465

Description

Chrysemys picta cpi-mir-129-1 precursor miRNA

Sequence

170857 reads, 1863.0 reads per million, 12 experiments

ucucucuuggauCUUUUUGCGGUCUGGGCUUGCUGuuccuccaaucaguagucaggAAGCCCUUACCCCAAAAAGUAUUugcgagggau
((((((.((((((((((((.(((..((((((.(((((.((......)).)).))).))))))..))).))))))).))))).)))))).

Structure

-      u     -       C   CU      G   -  c  cc 
 ucucuc uggau CUUUUUG GGU  GGGCUU CUG uu cu  a
 |||||| ||||| ||||||| |||  |||||| ||| || ||   
 agggag guUUA GAAAAAC CCA  CCCGAA gac ga ga  a
u      c     U       C   UU      g   u  u  cu 

Annotation confidence High

Genome context

KK083108.1: 482888-482976 [-]

Mature cpi-miR-129-5p

• Accession: MIMAT0037738
• Description: Chrysemys picta cpi-miR-129-5p mature miRNA
• Sequence: 13 - CUUUUUGCGGUCUGGGCUUGCUG - 35
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-129-3p

• Accession: MIMAT0037739
• Description: Chrysemys picta cpi-miR-129-3p mature miRNA
• Sequence: 57 - AAGCCCUUACCCCAAAAAGUAUU - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196