Stem-loop cpi-mir-130a

Accession

MI0029467

Description

Chrysemys picta cpi-mir-130a precursor miRNA

Sequence

42204 reads, 458.0 reads per million, 12 experiments

cacgccgccguccuggGCUCUUUUCACAUUGUGCUACUgucugagccccugccaagCAGUGCAAUGUCAAAAGGGCAUcgggcaggcggugccggcag
..(((((((..(((((((((((((.(((((((...(((((.((.((....)))).)))))))))))).)))))))).)))))..))))))).......

Structure

-----ca       gu     -        C       GCU     c  a  c 
       cgccgcc  ccugg GCUCUUUU ACAUUGU   ACUgu ug gc c
       |||||||  ||||| |||||||| |||||||   ||||| || ||  
       guggcgg  gggcU CGGGAAAA UGUAACG   UGACg ac cg c
gacggcc       ac     A        C       ---     a  -  u 

Annotation confidence High

Genome context

KK082996.1: 1787617-1787714 [+]

Mature cpi-miR-130a-5p

• Accession: MIMAT0037741
• Description: Chrysemys picta cpi-miR-130a-5p mature miRNA
• Sequence: 17 - GCUCUUUUCACAUUGUGCUACU - 38
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-130a-3p

• Accession: MIMAT0037742
• Description: Chrysemys picta cpi-miR-130a-3p mature miRNA
• Sequence: 57 - CAGUGCAAUGUCAAAAGGGCAU - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196