Stem-loop cpi-mir-130c

Accession

MI0029469

Description

Chrysemys picta cpi-mir-130c precursor miRNA

Sequence

77724 reads, 881.0 reads per million, 12 experiments

acuguuguccagaGCCCUUUUUCUGUUGUACUAcuggcaauuaugaugagCAGUGCAAUAUUAAAAGGGCauuggcuggcagaaa
.((((((.((((.((((((((..(((((((((.((.(((....)).).)).)))))))))..)))))))).)))).))))))...

Structure

--a      u    a        UC         A  g -  a 
   cuguug ccag GCCCUUUU  UGUUGUACU cu g ca u
   |||||| |||| ||||||||  ||||||||| || | ||  
   gacggu gguu CGGGAAAA  AUAACGUGA ga u gu u
aaa      c    a        UU         C  g a  a 

Annotation confidence High

Genome context

KK082934.1: 2435537-2435621 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from cpi-mir-130c

Mature cpi-miR-130c-5p

• Accession: MIMAT0037745
• Description: Chrysemys picta cpi-miR-130c-5p mature miRNA
• Sequence: 14 - GCCCUUUUUCUGUUGUACUA - 33
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-130c-3p

• Accession: MIMAT0037746
• Description: Chrysemys picta cpi-miR-130c-3p mature miRNA
• Sequence: 51 - CAGUGCAAUAUUAAAAGGGC - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196