Stem-loop cpi-mir-135-2

Accession

MI0029477

Description

Chrysemys picta cpi-mir-135-2 precursor miRNA

Sequence

51512 reads, 542.0 reads per million, 12 experiments

aauucacucuaguguuuUAUGGCUUUUUAUUCCUAUGUGAUaguaauaaagucucaUGUAGGGAUGGAAGCCAUGAAauacauugugaaaa
..(((((....((((((((((((((((.((((((((((((.(.(.....).).))))))))))))))))))))))))))))...)))))..

Structure

aa     ucua                U            U g a 
  uucac    guguuuUAUGGCUUUU AUUCCUAUGUGA a u a
  |||||    |||||||||||||||| |||||||||||| | | u
  aagug    cauaAAGUACCGAAGG UAGGGAUGUacu u a a
aa     -uua                -            c g a 

Annotation confidence High

Genome context

KK088183.1: 2915322-2915412 [+]

Mature cpi-miR-135-5p

• Accession: MIMAT0037754
• Description: Chrysemys picta cpi-miR-135-5p mature miRNA
• Sequence: 18 - UAUGGCUUUUUAUUCCUAUGUGAU - 41
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-135-2-3p

• Accession: MIMAT0037756
• Description: Chrysemys picta cpi-miR-135-2-3p mature miRNA
• Sequence: 57 - UGUAGGGAUGGAAGCCAUGAA - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196