Stem-loop cpi-mir-137a

Accession

MI0029479

Description

Chrysemys picta cpi-mir-137a precursor miRNA

Sequence

129725 reads, 1308.0 reads per million, 12 experiments

acucucuucggugACGGGUAUUCUUGGGUGGAUaauacggauuacguugUUAUUGCUUAAGAAUACGCGUagucgaggagaguaccc
(((((((((((..(((.(((((((((((((.((((((((.....)).))))))))))))))))))).)))..)))))))))))....

Structure

----           ug   G             G      -  g 
    acucucuucgg  ACG GUAUUCUUGGGUG AUaaua cg a
    |||||||||||  ||| ||||||||||||| |||||| || u
    ugagaggagcu  UGC CAUAAGAAUUCGU UAUUgu gc u
ccca           ga   G             -      u  a 

Annotation confidence High

Genome context

KK082967.1: 5190713-5190799 [+]

Mature cpi-miR-137a-5p

• Accession: MIMAT0059152
• Description: Chrysemys picta cpi-miR-137a-5p mature miRNA
• Sequence: 14 - ACGGGUAUUCUUGGGUGGAU - 33
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-137a-3p

• Accession: MIMAT0037758
• Description: Chrysemys picta cpi-miR-137a-3p mature miRNA
• Sequence: 50 - UUAUUGCUUAAGAAUACGCGU - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196