Stem-loop cpi-mir-137b

Accession

MI0029480

Description

Chrysemys picta cpi-mir-137b precursor miRNA

Sequence

33439 reads, 355.0 reads per million, 12 experiments

agcccacuagcucccuucgaugACGGGUAUUCUUGGGUAGAUAAUacggauugcguugUUAUUGCUUGAGAAUACGCGUAGccgaggggagagucgcuc
(((..(((..(((((((((...(((.((((((((((((((.(((((((.....)).))))))))))))))))))).)))...)))))))))))).))).

Structure

-   cc   ag         aug   G              A     -  g 
 agc  acu  cucccuucg   ACG GUAUUCUUGGGUAG UAAUa cg a
 |||  |||  |||||||||   ||| |||||||||||||| ||||| || u
 ucg  uga  gaggggagc   UGC CAUAAGAGUUCGUU AUUgu gc u
c   -c   --         cGA   G              -     u  g 

Annotation confidence High

Genome context

KK083153.1: 32193-32291 [-]

Mature cpi-miR-137b-5p

• Accession: MIMAT0059153
• Description: Chrysemys picta cpi-miR-137b-5p mature miRNA
• Sequence: 23 - ACGGGUAUUCUUGGGUAGAUAAU - 45
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-137b-3p

• Accession: MIMAT0037759
• Description: Chrysemys picta cpi-miR-137b-3p mature miRNA
• Sequence: 59 - UUAUUGCUUGAGAAUACGCGUAG - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196