Stem-loop cpi-mir-138

Accession

MI0029481

Description

Chrysemys picta cpi-mir-138 precursor miRNA

Literature search

1 open access papers mention cpi-mir-138
(2 sentences)

Sequence

125550 reads, 1242.0 reads per million, 12 experiments

gguauuguugcugcAGCUGGUGUUGUGAAUCAGGCCGacaacaagcucauccuacuauccgGCUAUUUCACUACACCAGGGUUGcaucauaccac
(((((.(.(((.((..(((((((.(((((...(((((......................)))))..))))).))))))).)).))).))))))..

Structure

--     u u   u  AG       U     UCA     acaacaagcu 
  gguau g ugc gc  CUGGUGU GUGAA   GGCCG          c
  ||||| | ||| ||  ||||||| |||||   |||||           
  ccaua c acG UG  GACCACA CACUU   UCGgc          a
ca     - u   U  -G       U     -UA     cuaucauccu 

Annotation confidence High

Genome context

chr15: 1379883-1379977 [-]

Mature cpi-miR-138-5p

• Accession: MIMAT0037760
• Description: Chrysemys picta cpi-miR-138-5p mature miRNA
• Sequence: 15 - AGCUGGUGUUGUGAAUCAGGCCG - 37
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-138-3p

• Accession: MIMAT0037761
• Description: Chrysemys picta cpi-miR-138-3p mature miRNA
• Sequence: 62 - GCUAUUUCACUACACCAGGGUUG - 84
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196