Stem-loop cpi-mir-142-1

Accession

MI0029484

Description

Chrysemys picta cpi-mir-142-1 precursor miRNA

Sequence

agacagugcagucaccCAUAAAGUAGAAAGCACUACUAaacagcacugcagggUGUAGUGUUUCCUACUUUAUGGaugaguguacugug
..((((((((.(((.(((((((((((.(((((((((....(.((...)).)...))))))))).))))))))))).))).)))))))).

Structure

ag        g   c           A         UAaa a  a 
  acagugca uca cCAUAAAGUAG AAGCACUAC    c gc  
  |||||||| ||| ||||||||||| |||||||||    | || c
  ugucaugu agu GGUAUUUCAUC UUUGUGAUG    g cg  
-g        g   a           C         -Ugg a  u 

Annotation confidence Not enough data

Genome context

KK083155.1: 203958-204046 [-]

Mature cpi-miR-142-5p

• Accession: MIMAT0037766
• Description: Chrysemys picta cpi-miR-142-5p mature miRNA
• Sequence: 17 - CAUAAAGUAGAAAGCACUACUA - 38
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-142-3p

• Accession: MIMAT0037767
• Description: Chrysemys picta cpi-miR-142-3p mature miRNA
• Sequence: 54 - UGUAGUGUUUCCUACUUUAUGG - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196