Stem-loop cpi-mir-142-2

Accession

MI0029485

Description

Chrysemys picta cpi-mir-142-2 precursor miRNA

Sequence

14958 reads, 158.0 reads per million, 12 experiments

acagugcacuccUCCAUAAAGUAGAAAGCACUacuaaaccgccgcgucccguGUAGUGUUUCCUACUUUAUGGaugaguguacuguga
(((((((((((.((((((((((((.(((((((((..................))))))))).)))))))))))).)))))))))))..

Structure

--           c            A         uaaaccgc 
  acagugcacuc UCCAUAAAGUAG AAGCACUac        c
  ||||||||||| |||||||||||| |||||||||         
  ugucaugugag aGGUAUUUCAUC UUUGUGAUG        g
ag           u            C         ugcccugc 

Annotation confidence Medium

Genome context

KK083282.1: 271379-271466 [-]

Mature cpi-miR-142-5p

• Accession: MIMAT0037766
• Description: Chrysemys picta cpi-miR-142-5p mature miRNA
• Sequence: 13 - UCCAUAAAGUAGAAAGCACU - 32
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-142-3p

• Accession: MIMAT0037767
• Description: Chrysemys picta cpi-miR-142-3p mature miRNA
• Sequence: 53 - GUAGUGUUUCCUACUUUAUGG - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196