Stem-loop cpi-mir-146c

Accession

MI0029491

Description

Chrysemys picta cpi-mir-146c precursor miRNA

Sequence

1228997 reads, 14432.0 reads per million, 12 experiments

gcaguucccagcucUGAGAACUGAAUUCCAUGGACUgguuucaguucuguaucuucagUCCAUGGUAGUCAGUUCUCUagcuuggcuguau
((((((...((((..(((((((((...(((((((((((................)))))))))))...))))))))).)))).))))))..

Structure

--      ccc    cU         AUU           uuucagu 
  gcaguu   agcu  GAGAACUGA   CCAUGGACUgg       u
  ||||||   ||||  |||||||||   |||||||||||        
  ugucgg   ucga  CUCUUGACU   GGUACCUgacu       c
ua      --u    -U         GAU           ucuaugu 

Annotation confidence Medium

Genome context

KK082944.1: 5730617-5730707 [+]

Mature cpi-miR-146c-5p

• Accession: MIMAT0037778
• Description: Chrysemys picta cpi-miR-146c-5p mature miRNA
• Sequence: 15 - UGAGAACUGAAUUCCAUGGACU - 36
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-146c-3p

• Accession: MIMAT0037779
• Description: Chrysemys picta cpi-miR-146c-3p mature miRNA
• Sequence: 59 - UCCAUGGUAGUCAGUUCUCU - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196