Stem-loop cpi-mir-147

Accession

MI0029492

Description

Chrysemys picta cpi-mir-147 precursor miRNA

Sequence

831 reads, 9.0 reads per million, 12 experiments

uacucuaugaaucuagUGGAAUCAUUUCUGCACAAACUcgacuacugaaaucaGUGUGCGGAAAUGCUUCUGCUacauuuuuagggucuc
.((((((.((((.((((((((.(((((((((((..........((((....))))))))))))))).)))))))).)))).))))))...

Structure

--u      u    c        U           AAACUcgacu    a 
   acucua gaau uagUGGAA CAUUUCUGCAC          acug a
   |||||| |||| |||||||| |||||||||||          ||||  
   ugggau uuua aUCGUCUU GUAAAGGCGUG          UGac a
cuc      u    c        C           ----------    u 

Annotation confidence Medium

Genome context

KK088241.1: 244538-244627 [+]

Mature cpi-miR-147-5p

• Accession: MIMAT0037780
• Description: Chrysemys picta cpi-miR-147-5p mature miRNA
• Sequence: 17 - UGGAAUCAUUUCUGCACAAACU - 38
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-147-3p

• Accession: MIMAT0037781
• Description: Chrysemys picta cpi-miR-147-3p mature miRNA
• Sequence: 54 - GUGUGCGGAAAUGCUUCUGCU - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196