Stem-loop cpi-mir-148b

Accession

MI0029494

Description

Chrysemys picta cpi-mir-148b precursor miRNA

Sequence

306920 reads, 3377.0 reads per million, 12 experiments

agcccgcagcauuugagguGAAGUUCUGUUAUACACUCUGACUguggcuacguggaggUCAGUGCAUCACAGAACUUUGUcucgagagcuuuuua
.......(((.((((((((((((((((((.((.((((..((((.(.((...)).).)))))))).)).)))))))))))))))))).))).....

Structure

agcccgc   a                  U  A    CU    g g  u 
       agc uuugagguGAAGUUCUGU AU CACU  GACU u gc  
       ||| |||||||||||||||||| || ||||  |||| | || a
       ucg gagcucUGUUUCAAGACA UA GUGA  CUgg g ug  
--auuuu   a                  C  C    --    a g  c 

Annotation confidence High

Genome context

KK083067.1: 443165-443259 [-]

Mature cpi-miR-148b-5p

• Accession: MIMAT0059154
• Description: Chrysemys picta cpi-miR-148b-5p mature miRNA
• Sequence: 20 - GAAGUUCUGUUAUACACUCUGACU - 43
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-148b-3p

• Accession: MIMAT0037784
• Description: Chrysemys picta cpi-miR-148b-3p mature miRNA
• Sequence: 59 - UCAGUGCAUCACAGAACUUUGU - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196