Stem-loop cpi-mir-153-2

Accession

MI0029497

Description

Chrysemys picta cpi-mir-153-2 precursor miRNA

Sequence

300059 reads, 3184.0 reads per million, 12 experiments

gcgguugccagugucAUUUUUGUGAUGUUGCAGCUaguaauaugagcccagUUGCAUAGUCACAAAAGUGAucauuggaaacugug
((((((.(((((((((((((((((((..(((((((.((.......))..)))))))..))))))))))))).)))))).)))))).

Structure

-      g      -             GU       -a  aa 
 gcgguu ccagug ucAUUUUUGUGAU  UGCAGCU  gu  u
 |||||| |||||| |||||||||||||  |||||||  ||  a
 ugucaa gguuac AGUGAAAACACUG  ACGUUga  cg  u
g      a      u             AU       cc  ag 

Annotation confidence High

Genome context

KK088209.1: 20659248-20659333 [+]

Mature cpi-miR-153-2-5p

• Accession: MIMAT0059155
• Description: Chrysemys picta cpi-miR-153-2-5p mature miRNA
• Sequence: 16 - AUUUUUGUGAUGUUGCAGCU - 35
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-153-3p

• Accession: MIMAT0037788
• Description: Chrysemys picta cpi-miR-153-3p mature miRNA
• Sequence: 52 - UUGCAUAGUCACAAAAGUGA - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196