Stem-loop cpi-mir-181b-1

Accession

MI0029503

Description

Chrysemys picta cpi-mir-181b-1 precursor miRNA

Sequence

428092 reads, 4762.0 reads per million, 12 experiments

aggucacaaucAACAUUCAUUGCUGUCGGUGGGUuuaacuauguggacaagCUCACUGAACAAUGAAUGCAacuguggccccac
.(((((((.....(((((((((...(((((((((((..((....))..))))))))))).)))))))))....)))))))....

Structure

---a       aucAA         CUG           aa  a 
    ggucaca     CAUUCAUUG   UCGGUGGGUuu  cu u
    |||||||     |||||||||   |||||||||||  ||  
    ccggugu     GUAAGUAAC   AGUCACUCgaa  gg g
cacc       -caAC         --A           ca  u 

Annotation confidence High

Genome context

KK088227.1: 2808979-2809062 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-181b-1

Mature cpi-miR-181b-5p

• Accession: MIMAT0037795
• Description: Chrysemys picta cpi-miR-181b-5p mature miRNA
• Sequence: 12 - AACAUUCAUUGCUGUCGGUGGGU - 34
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-181b-1-3p

• Accession: MIMAT0037796
• Description: Chrysemys picta cpi-miR-181b-1-3p mature miRNA
• Sequence: 52 - CUCACUGAACAAUGAAUGCA - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196