Stem-loop cpi-mir-184

Accession

MI0029508

Description

Chrysemys picta cpi-mir-184 precursor miRNA

Sequence

76998 reads, 931.0 reads per million, 12 experiments

gcagccauucucguguCCUUAUCACUUUUCCAGCCCAGCUuuuucauuguaacuguUGGACGGAGAACUGAUAAGGGUaugugacugacaugaa
.....((.((.(((((((((((((.((((((.(.(((((...............))))).))))))).))))))))))))).)).)).......

Structure

--gcagc  u  u             C      A C     Uuuuuc 
       ca uc cguguCCUUAUCA UUUUCC G CCAGC      a
       || || ||||||||||||| |||||| | |||||      u
       gu ag guaUGGGAAUAGU AAGAGG C GGUug      u
aaguaca  c  u             C      - A     ucaaug 

Annotation confidence High

Genome context

KK082964.1: 1234993-1235086 [-]

Mature cpi-miR-184-5p

• Accession: MIMAT0059157
• Description: Chrysemys picta cpi-miR-184-5p mature miRNA
• Sequence: 17 - CCUUAUCACUUUUCCAGCCCAGCU - 40
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-184-3p

• Accession: MIMAT0037801
• Description: Chrysemys picta cpi-miR-184-3p mature miRNA
• Sequence: 57 - UGGACGGAGAACUGAUAAGGGU - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196