Stem-loop cpi-mir-190a

Accession

MI0029510

Description

Chrysemys picta cpi-mir-190a precursor miRNA

Sequence

9607 reads, 100.0 reads per million, 12 experiments

ugcagggcucugugUGAUAUGUUUGAUAUAUUAGGUUGUuauuuaauccaACUAUAUAUCAAACAUAUUCCUauaguguccugccc
.(((((((.(((((.((((((((((((((((..(((((..........)))))))))))))))))))))..))))).)))))))..

Structure

-u       u     -U                UA     Uuau 
  gcagggc cugug  GAUAUGUUUGAUAUAU  GGUUG    u
  ||||||| |||||  ||||||||||||||||  |||||     
  cguccug gauaU  UUAUACAAACUAUAUA  UCAac    u
cc       u     CC                --     cuaa 

Annotation confidence High

Genome context

KK088223.1: 9157959-9158044 [+]

Mature cpi-miR-190a-5p

• Accession: MIMAT0037804
• Description: Chrysemys picta cpi-miR-190a-5p mature miRNA
• Sequence: 15 - UGAUAUGUUUGAUAUAUUAGGUUGU - 39
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-190a-3p

• Accession: MIMAT0059158
• Description: Chrysemys picta cpi-miR-190a-3p mature miRNA
• Sequence: 51 - ACUAUAUAUCAAACAUAUUCCU - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196