miRBase entry: cpi-mir-191

Stem-loop cpi-mir-191


Accession
MI0029512
Description
Chrysemys picta cpi-mir-191 precursor miRNA


Sequence

384094 reads, 4608.0 reads per million, 12 experiments
ugauggcacgacagcgggCAACGGAAUCCCAAAAGCAGCUGUcuuccucugagcauuccaGCUGCGGUUGGAUUUCGUUACCUGcucuccugcccgg
....((((.((.((((((.((((((((((.((..(((((((.................)))))))..)))))))))))).)))))).)).))))...

Structure
ugau    c  c      C          C  AA       Ucuuccu 
    ggca ga agcggg AACGGAAUCC AA  GCAGCUG       c
    |||| || |||||| |||||||||| ||  |||||||       u
    ccgu cu ucGUCC UUGCUUUAGG UU  CGUCGac       g
-ggc    c  c      A          -  GG       cuuacga 


Annotation confidence High
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Genome context
KK083069.1: 935418-935514 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from cpi-mir-191
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpi-miR-191-5p

Accession MIMAT0037806
Description Chrysemys picta cpi-miR-191-5p mature miRNA
Sequence 19 - CAACGGAAUCCCAAAAGCAGCUGU - 42
Evidence experimental
Illumina [1]

Mature cpi-miR-191-3p

Accession MIMAT0059159
Description Chrysemys picta cpi-miR-191-3p mature miRNA
Sequence 61 - GCUGCGGUUGGAUUUCGUUACCUG - 84
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196