miRBase entry: cpi-mir-193a

Stem-loop cpi-mir-193a


Accession
MI0029514
Description
Chrysemys picta cpi-mir-193a precursor miRNA


Sequence

2169 reads, 23.0 reads per million, 12 experiments
gggcgagucuagggcUGGGUCUUUGCGGGCGAGAUGAgagguuuguggauucAACUGGCCUACAAAGUCCCAGUUcucggcucc
....(((((.(((((((((.(((((.((((.((.((((...........)))).)).)))).))))).))))))))).))))).

Structure
gggc     u         U     C    G  A    aggu 
    gaguc agggcUGGG CUUUG GGGC AG UGAg    u
    ||||| ||||||||| ||||| |||| || ||||    u
    cucgg ucUUGACCC GAAAC UCCG UC Acuu    g
---c     c         U     A    G  A    aggu 


Annotation confidence High
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Genome context
KK082918.1: 1636933-1637016 [+]

Database links

Mature cpi-miR-193a-5p

Accession MIMAT0037809
Description Chrysemys picta cpi-miR-193a-5p mature miRNA
Sequence 16 - UGGGUCUUUGCGGGCGAGAUGA - 37
Evidence experimental
Illumina [1]

Mature cpi-miR-193a-3p

Accession MIMAT0037810
Description Chrysemys picta cpi-miR-193a-3p mature miRNA
Sequence 53 - AACUGGCCUACAAAGUCCCAGUU - 75
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196