Stem-loop cpi-mir-196-2

Accession

MI0029519

Description

Chrysemys picta cpi-mir-196-2 precursor miRNA

Sequence

ugcagcugaucugugguuUAGGUAGUUUCAUGUUGUUGGGauuggcuuuuagcUCGGCAACAAGAAACUGCCUUAauuacgucaguuagucu
.(((((((((..((((((.((((((((((.((((((((((.(((.....))))))))))))).)))))))))).))))))))))))).))..

Structure

-u  -       cu      U          A          a   g 
  gc agcugau  gugguu AGGUAGUUUC UGUUGUUGGG uug c
  || |||||||  |||||| |||||||||| |||||||||| ||| u
  ug uugacug  cauuaA UCCGUCAAAG ACAACGGCUc gau u
uc  a       --      U          A          -   u 

Annotation confidence Not enough data

Genome context

KK083067.1: 1032828-1032919 [-]

Mature cpi-miR-196-5p

• Accession: MIMAT0037815
• Description: Chrysemys picta cpi-miR-196-5p mature miRNA
• Sequence: 19 - UAGGUAGUUUCAUGUUGUUGGG - 40
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-196-2-3p

• Accession: MIMAT0037817
• Description: Chrysemys picta cpi-miR-196-2-3p mature miRNA
• Sequence: 54 - UCGGCAACAAGAAACUGCCUUA - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196