Stem-loop cpi-mir-199-1

Accession

MI0029521

Description

Chrysemys picta cpi-mir-199-1 precursor miRNA

Sequence

78433 reads, 894.0 reads per million, 12 experiments

ccagcccagccugCCCAGUGUUCAGACUACCUGUUcaggaggcuaucaagguguACAGUAGUCUGCACAUUGGUUAgauuggguuuggu
(((((((((.(((.(((((((.((((((((.(((.((..............)).))))))))))).))))))).))).))))).)))).

Structure

-    -     c   C       U        C   U  ggaggc 
 ccag cccag cug CCAGUGU CAGACUAC UGU ca      u
 |||| ||||| ||| ||||||| |||||||| ||| ||       
 gguu ggguu gAU GGUUACA GUCUGAUG ACA gu      a
u    u     a   U       C        -   u  ggaacu 

Annotation confidence High

Genome context

KK083214.1: 569144-569232 [+]

Mature cpi-miR-199-5p

• Accession: MIMAT0037818
• Description: Chrysemys picta cpi-miR-199-5p mature miRNA
• Sequence: 14 - CCCAGUGUUCAGACUACCUGUU - 35
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-199-3p

• Accession: MIMAT0037819
• Description: Chrysemys picta cpi-miR-199-3p mature miRNA
• Sequence: 55 - ACAGUAGUCUGCACAUUGGUUA - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196