Stem-loop cpi-mir-199-3

Accession

MI0029523

Description

Chrysemys picta cpi-mir-199-3 precursor miRNA

Sequence

78411 reads, 894.0 reads per million, 12 experiments

gcuccacuccgucugCCCAGUGUUCAGACUACCUGUUcaggacuacgagauuguACAGUAGUCUGCACAUUGGUUAggcugugcuggga
..(((((.(.(((((.(((((((.((((((((.(((.(((..........))).))))))))))).))))))).))))).).).)))).

Structure

gc    - u c     C       U        C   U   gacu 
  ucca c c gucug CCAGUGU CAGACUAC UGU cag    a
  |||| | | ||||| ||||||| |||||||| ||| |||     
  gggu g g cggAU GGUUACA GUCUGAUG ACA guu    c
-a    c u u     U       C        -   u   agag 

Annotation confidence High

Genome context

KK082938.1: 6508778-6508866 [-]

Mature cpi-miR-199-5p

• Accession: MIMAT0037818
• Description: Chrysemys picta cpi-miR-199-5p mature miRNA
• Sequence: 16 - CCCAGUGUUCAGACUACCUGUU - 37
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-199-3p

• Accession: MIMAT0037819
• Description: Chrysemys picta cpi-miR-199-3p mature miRNA
• Sequence: 55 - ACAGUAGUCUGCACAUUGGUUA - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196