Stem-loop cpi-mir-200b

Accession

MI0029525

Description

Chrysemys picta cpi-mir-200b precursor miRNA

Literature search

1 open access papers mention cpi-mir-200b
(1 sentences)

Sequence

12919 reads, 122.0 reads per million, 12 experiments

acccugggaugccauuacCAUCUUACUGGGCAGCAUUGGauguuuucuguguuucUAAUACUGCCUGGUAAUGAUGAUUauggugucucgcac
....(((((((((((...(((((((((((((((.((((((.............)))))).))))))))))).))))...)))))))))))...

Structure

accc           uac    -           C      uguuu 
    ugggaugccau   CAUC UUACUGGGCAG AUUGGa     u
    |||||||||||   |||| ||||||||||| ||||||     c
    gcucuguggua   GUAG AAUGGUCCGUC UAAUcu     u
-cac           UUA    U           A      uugug 

Annotation confidence High

Genome context

chr24: 8884139-8884231 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cpi-mir-200b

Mature cpi-miR-200b-5p

• Accession: MIMAT0037822
• Description: Chrysemys picta cpi-miR-200b-5p mature miRNA
• Sequence: 19 - CAUCUUACUGGGCAGCAUUGG - 39
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-200b-3p

• Accession: MIMAT0037823
• Description: Chrysemys picta cpi-miR-200b-3p mature miRNA
• Sequence: 56 - UAAUACUGCCUGGUAAUGAUGAUU - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196