Stem-loop cpi-mir-204-1

Accession

MI0029528

Description

Chrysemys picta cpi-mir-204-1 precursor miRNA

Sequence

ucaugugacccguggacUUCCCUUUGUCAUCCUAUGCCUgagaauauaugaaggggGCUGGGAAGGCAAAGGGACGUucaacugucaucacuggc
....(((((...(((((.((((((((((.(((((.((((...............))))))))).)))))))))).)))))...))))).......

Structure

---ucau     ccg     U          A     U    gagaau 
       gugac   uggac UCCCUUUGUC UCCUA GCCU      a
       |||||   ||||| |||||||||| ||||| ||||      u
       uacug   acuUG AGGGAAACGG AGGGU CGgg      a
cggucac     uca     C          A     -    ggaagu 

Annotation confidence Not enough data

Genome context

KK082927.1: 8802135-8802229 [+]

Mature cpi-miR-204-5p

• Accession: MIMAT0037827
• Description: Chrysemys picta cpi-miR-204-5p mature miRNA
• Sequence: 18 - UUCCCUUUGUCAUCCUAUGCCU - 39
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-204-3p

• Accession: MIMAT0037828
• Description: Chrysemys picta cpi-miR-204-3p mature miRNA
• Sequence: 57 - GCUGGGAAGGCAAAGGGACGU - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196