Stem-loop cpi-mir-204-2

Accession

MI0029529

Description

Chrysemys picta cpi-mir-204-2 precursor miRNA

Sequence

2763782 reads, 34072.0 reads per million, 12 experiments

gaccaugugaccugugggcUUCCCUUUGUCAUCCUAUGCCUggaguucauagugagGCAGGGACAGCAAAGGGAUGcucaguugucgucuc
(((.....(((...(((((.(((((((((..((((.(((((.............)))))))))..))))))))).)))))...))))))..

Structure

--   caugu   cug     U         CA    A     ggagu 
  gac     gac   ugggc UCCCUUUGU  UCCU UGCCU     u
  |||     |||   ||||| |||||||||  |||| |||||     c
  cug     cug   acucG AGGGAAACG  AGGG ACGga     a
cu   -----   uug     U         AC    -     gugau 

Annotation confidence Not enough data

Genome context

KK088223.1: 6146152-6146242 [-]

Mature cpi-miR-204-5p

• Accession: MIMAT0037827
• Description: Chrysemys picta cpi-miR-204-5p mature miRNA
• Sequence: 20 - UUCCCUUUGUCAUCCUAUGCCU - 41
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-204-2-3p

• Accession: MIMAT0059160
• Description: Chrysemys picta cpi-miR-204-2-3p mature miRNA
• Sequence: 57 - GCAGGGACAGCAAAGGGAUG - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196