miRBase entry: cpi-mir-216b

Stem-loop cpi-mir-216b


Accession
MI0029540
Description
Chrysemys picta cpi-mir-216b precursor miRNA


Sequence

991 reads, 11.0 reads per million, 12 experiments
aagucauagacugggAAAUCUCUGCAGGCAAAUGUGAUGuauuuauagcaaucucaCAAUUACCUGUAGAGUUUCUGcaaucug
......((((.(((((((.(((((((((.((.((((((((.......)))...))))).)).)))))))))))))).)).))))

Structure
aaguca    c  -     U         C  A     ---   au 
      uaga ug ggAAA CUCUGCAGG AA UGUGA   UGu  u
      |||| || ||||| ||||||||| || |||||   |||  u
      gucu ac UCUUU GAGAUGUCC UU ACacu   acg  a
------    a  G     -         A  A     cua   au 


Annotation confidence Medium
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Genome context
KK083117.1: 219536-219619 [-]

Database links

Mature cpi-miR-216b-5p

Accession MIMAT0037844
Description Chrysemys picta cpi-miR-216b-5p mature miRNA
Sequence 16 - AAAUCUCUGCAGGCAAAUGUGAUG - 39
Evidence experimental
Illumina [1]

Mature cpi-miR-216b-3p

Accession MIMAT0059162
Description Chrysemys picta cpi-miR-216b-3p mature miRNA
Sequence 57 - CAAUUACCUGUAGAGUUUCUG - 77
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196