miRBase entry: cpi-mir-217

Stem-loop cpi-mir-217


Accession
MI0029541
Description
Chrysemys picta cpi-mir-217 precursor miRNA


Sequence

727 reads, 8.0 reads per million, 12 experiments
aguuuuugaugucgcagAUACUGCAUCAGGAACUGAUUGgauaauaaucagccacCAUCAGUUCCUAAUGCAUUGCCUucagcaucuauacaagcauc
.((....(((((.(.((.((.(((((.(((((((((((((...........)))..)))))))))).))))).)).)).).)))))...)).......

Structure
------a  uuuu     c c  A  C     C          --   auaa 
       gu    gaugu g ag UA UGCAU AGGAACUGAU  UGg    u
       ||    ||||| | || || ||||| ||||||||||  |||    a
       ca    cuacg c UC GU ACGUA UCCUUGACUA  acc    a
cuacgaa  -uau     a u  C  U     A          Cc   gacu 


Annotation confidence High
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Genome context
KK083117.1: 201885-201982 [-]

Database links

Mature cpi-miR-217-5p

Accession MIMAT0037845
Description Chrysemys picta cpi-miR-217-5p mature miRNA
Sequence 18 - AUACUGCAUCAGGAACUGAUUG - 39
Evidence experimental
Illumina [1]

Mature cpi-miR-217-3p

Accession MIMAT0059163
Description Chrysemys picta cpi-miR-217-3p mature miRNA
Sequence 56 - CAUCAGUUCCUAAUGCAUUGCCU - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196