Stem-loop cpi-mir-218-1

Accession

MI0029542

Description

Chrysemys picta cpi-mir-218-1 precursor miRNA

Sequence

140767 reads, 1529.0 reads per million, 12 experiments

agcgagauuuucugUUGUGCUUGAUCUAACCAUGUGGuugcaagguaugaguaAAACAUGGUUCUGUCAAGCACcauggaacgucacgcagcu
.(((.(((.((((((.(((((((((..((((((((..((((.........)))).))))))))..))))))))).)))))).))).)))....

Structure

---a   a   u      U         CU        GG    aag 
    gcg gau uucugU GUGCUUGAU  AACCAUGU  uugc   g
    ||| ||| |||||| |||||||||  ||||||||  ||||   u
    cgc cug aaggua CACGAACUG  UUGGUACA  Aaug   a
ucga   a   c      c         UC        -A    agu 

Annotation confidence Medium

Genome context

KK084027.1: 28867-28959 [+]

Mature cpi-miR-218-5p

• Accession: MIMAT0037846
• Description: Chrysemys picta cpi-miR-218-5p mature miRNA
• Sequence: 15 - UUGUGCUUGAUCUAACCAUGUGG - 37
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-218-1-3p

• Accession: MIMAT0059164
• Description: Chrysemys picta cpi-miR-218-1-3p mature miRNA
• Sequence: 54 - AAACAUGGUUCUGUCAAGCAC - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196