Stem-loop cpi-mir-218-2

Accession

MI0029543

Description

Chrysemys picta cpi-mir-218-2 precursor miRNA

Sequence

139501 reads, 1514.0 reads per million, 12 experiments

ugggguuuuccuUUGUGCUUGAUCUAACCAUGUGGuagaacaauacaaauugAACAUGGUUCUGUCAAGCACcauggaaggcugcau
((.((((((((...(((((((((..((((((((....................))))))))..)))))))))...)))))))).)).

Structure

-  g        uUU         CU        GGuagaaca 
 ug gguuuucc   GUGCUUGAU  AACCAUGU         a
 || ||||||||   |||||||||  ||||||||          
 ac ucggaagg   CACGAACUG  UUGGUACA         u
u  g        uac         UC        Aguuaaaca 

Annotation confidence Medium

Genome context

KK088198.1: 11351103-11351189 [-]

Mature cpi-miR-218-5p

• Accession: MIMAT0037846
• Description: Chrysemys picta cpi-miR-218-5p mature miRNA
• Sequence: 13 - UUGUGCUUGAUCUAACCAUGUGG - 35
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-218-3p

• Accession: MIMAT0037847
• Description: Chrysemys picta cpi-miR-218-3p mature miRNA
• Sequence: 53 - AACAUGGUUCUGUCAAGCAC - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196