Stem-loop cpi-mir-219-1

Accession

MI0029544

Description

Chrysemys picta cpi-mir-219-1 precursor miRNA

Sequence

441 reads, 5.0 reads per million, 12 experiments

cugaacaccggcuccUGAUUGUCCAAACGCAAUUCUUGUGucugcgcccaAGAAUUGAGUGUGGACGUCGUGagccgggguuuccu
..((((.(((((((.((((.(((((.((.(((((((((.((....)).))))))))).)).))))))))).))))))).))))...

Structure

-cu    a       c    U     A  G         U  c 
   gaac ccggcuc UGAU GUCCA AC CAAUUCUUG Gu u
   |||| ||||||| |||| ||||| || ||||||||| ||  
   uuug ggccgaG GCUG CAGGU UG GUUAAGAac cg g
ucc    g       U    -     G  A         c  c 

Annotation confidence High

Genome context

KK083606.1: 130495-130580 [+]

Mature cpi-miR-219-5p

• Accession: MIMAT0037848
• Description: Chrysemys picta cpi-miR-219-5p mature miRNA
• Sequence: 16 - UGAUUGUCCAAACGCAAUUCUUGUG - 40
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-219-1-3p

• Accession: MIMAT0059165
• Description: Chrysemys picta cpi-miR-219-1-3p mature miRNA
• Sequence: 51 - AGAAUUGAGUGUGGACGUCGUG - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196