Stem-loop cpi-mir-222b

Accession

MI0029548

Description

Chrysemys picta cpi-mir-222b precursor miRNA

Sequence

12415 reads, 141.0 reads per million, 12 experiments

gaugcaauuggcUGCUCAGUAGUCGGUGUAGGAUcugucugacauuauuaccaacAGCUACAUCUGAUUACUGGGUcacugauagcaucauca
(((((.(((((..((((((((((((((((((...((((.((..........))))))))))).)))))))))))))..))))).)))))....

Structure

----     a     cU             -     GAU    c  acau 
    gaugc auugg  GCUCAGUAGUCGG UGUAG   cugu ug    u
    ||||| |||||  ||||||||||||| |||||   |||| ||     
    cuacg uaguc  UGGGUCAUUAGUC ACAUC   GAca ac    a
acua     a     ac             U     ---    -  cauu 

Annotation confidence Medium

Genome context

KK082974.1: 415673-415765 [+]

Mature cpi-miR-222b-5p

• Accession: MIMAT0037854
• Description: Chrysemys picta cpi-miR-222b-5p mature miRNA
• Sequence: 13 - UGCUCAGUAGUCGGUGUAGGAU - 34
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-222b-3p

• Accession: MIMAT0037855
• Description: Chrysemys picta cpi-miR-222b-3p mature miRNA
• Sequence: 56 - AGCUACAUCUGAUUACUGGGU - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196