Stem-loop cpi-mir-338a

Accession

MI0029556

Description

Chrysemys picta cpi-mir-338a precursor miRNA

Sequence

gcuucuccuccccAACAAUAUCCUGGUGCUGAGUgaguugcacacggagacUCCAGCAUCAGUGAUUUUGUUGAagagggcgagc
((((.(((((..((((((.((((((((((((...(((((.(.....).)))))))))))))).))).))))))..))))).))))

Structure

    c     cc      U   -         AGU     g a 
gcuu uccuc  cAACAA AUC CUGGUGCUG   gaguu c c
|||| |||||  |||||| ||| |||||||||   ||||| | a
cgag gggag  GUUGUU UAG GACUACGAC   CUcag g c
    c     aA      U   U         ---     a g 

Annotation confidence Not enough data

Genome context

KK082918.1: 11346023-11346107 [+]

Mature cpi-miR-338a-5p

• Accession: MIMAT0037864
• Description: Chrysemys picta cpi-miR-338a-5p mature miRNA
• Sequence: 14 - AACAAUAUCCUGGUGCUGAGU - 34
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-338a-3p

• Accession: MIMAT0037865
• Description: Chrysemys picta cpi-miR-338a-3p mature miRNA
• Sequence: 52 - UCCAGCAUCAGUGAUUUUGUUGA - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196