Stem-loop cpi-mir-365-1

Accession

MI0029559

Description

Chrysemys picta cpi-mir-365-1 precursor miRNA

Sequence

6586 reads, 70.0 reads per million, 12 experiments

uaccgcagggaaaaugAGGGACUUUUGGGGGCAGAUGUGUuuccauuacacuaucaUAAUGCCCCUAAAAAUCCUUAUUacucuugcaguauu
(((.((((((..((((((((..((((((((((((((((((.......)))).)))....))))))))))).))))))))..)))))).)))..

Structure

--   c      aa        AC           ----   -    uu 
  uac gcaggg  aaugAGGG  UUUUGGGGGCA    GAU GUGU  c
  ||| ||||||  ||||||||  |||||||||||    ||| ||||  c
  aug cguucu  UUAUUCCU  AAAAUCCCCGU    cua caca  a
uu   a      ca        -A           AAUa   u    uu 

Annotation confidence High

Genome context

KK083043.1: 1900945-1901037 [-]

Mature cpi-miR-365-1-5p

• Accession: MIMAT0059169
• Description: Chrysemys picta cpi-miR-365-1-5p mature miRNA
• Sequence: 17 - AGGGACUUUUGGGGGCAGAUGUGU - 40
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-365-3p

• Accession: MIMAT0037870
• Description: Chrysemys picta cpi-miR-365-3p mature miRNA
• Sequence: 57 - UAAUGCCCCUAAAAAUCCUUAUU - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196