Stem-loop cpi-mir-365-2

Accession

MI0029560

Description

Chrysemys picta cpi-mir-365-2 precursor miRNA

Sequence

10102 reads, 108.0 reads per million, 12 experiments

agaggcagcaagaaaaauGAGGGACUUUCAGGGGCAGCUGUguuuuacuaacccagucaUAAUGCCCCUAAAAAUCCUUAUUGuucuugcaauguucaa
.(((...(((((((.((((((((..(((.(((((((((((.(((.....))).)))).....))))))).))).)))))))).)))))))....)))..

Structure

-a   -gca       a        AC   C       -----    U   u 
  gag    gcaagaa aauGAGGG  UUU AGGGGCA     GCUG guu u
  |||    ||||||| ||||||||  ||| |||||||     |||| ||| a
  cuu    cguucuu UUAUUCCU  AAA UCCCCGU     ugac caa c
aa   guaa       G        -A   A       AAUac    c   u 

Annotation confidence High

Genome context

KK082918.1: 1655630-1655728 [+]

Mature cpi-miR-365-5p

• Accession: MIMAT0037871
• Description: Chrysemys picta cpi-miR-365-5p mature miRNA
• Sequence: 19 - GAGGGACUUUCAGGGGCAGCUGU - 41
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-365-3p

• Accession: MIMAT0037870
• Description: Chrysemys picta cpi-miR-365-3p mature miRNA
• Sequence: 60 - UAAUGCCCCUAAAAAUCCUUAUUG - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196