Stem-loop cpi-mir-425

Accession

MI0029564

Description

Chrysemys picta cpi-mir-425 precursor miRNA

Sequence

28595 reads, 345.0 reads per million, 12 experiments

uggcgagaaauugcuuuggAAUGACACGAUCACUCCCGCUGagcaagcagccagagcCAUCGGGAAUAUCGUGUCCGUCcaaagcuuuuucggca
((.(((((((..((((((((..((((((((...(((((.((.((...........)))).)))))..))))))))..))))))))))))))).))

Structure

  g       uu        AU        CAC     C  a  aagc 
ug cgagaaa  gcuuuggA  GACACGAU   UCCCG UG gc    a
|| |||||||  ||||||||  ||||||||   ||||| || ||    g
ac gcuuuuu  cgaaacCU  CUGUGCUA   AGGGC AC cg    c
  g       --        GC        -UA     U  -  agac 

Annotation confidence High

Genome context

KK083069.1: 932525-932619 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from cpi-mir-425

Mature cpi-miR-425-5p

• Accession: MIMAT0037875
• Description: Chrysemys picta cpi-miR-425-5p mature miRNA
• Sequence: 20 - AAUGACACGAUCACUCCCGCUG - 41
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-425-3p

• Accession: MIMAT0037876
• Description: Chrysemys picta cpi-miR-425-3p mature miRNA
• Sequence: 58 - CAUCGGGAAUAUCGUGUCCGUC - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196