Stem-loop cpi-mir-454

Accession

MI0029571

Description

Chrysemys picta cpi-mir-454 precursor miRNA

Sequence

111283 reads, 1278.0 reads per million, 12 experiments

ccuuaaggaagagACCCUAUCAAUAUUGCCUCUGcuuuugugaucaggguagUAGUGCAAUAUUGCUUAUAGGGUcuuuucuuuggagggu
((((((((((((((((((((((((((((((((((((((.(....)))))))).)).)))))))))...)))))))))))))))).))))..

Structure

--    -                ---         -  -       u u 
  ccuu aaggaagagACCCUAU   CAAUAUUGC CU CUGcuuu g g
  |||| ||||||||||||||||   ||||||||| || ||||||| |  
  ggag uuucuuuucUGGGAUA   GUUAUAACG GA gauggga c a
ug    g                UUC         U  U       - u 

Annotation confidence High

Genome context

KK082934.1: 2427643-2427733 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from cpi-mir-454

Mature cpi-miR-454-5p

• Accession: MIMAT0037885
• Description: Chrysemys picta cpi-miR-454-5p mature miRNA
• Sequence: 14 - ACCCUAUCAAUAUUGCCUCUG - 34
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-454-3p

• Accession: MIMAT0037886
• Description: Chrysemys picta cpi-miR-454-3p mature miRNA
• Sequence: 53 - UAGUGCAAUAUUGCUUAUAGGGU - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196