Stem-loop cpi-mir-458

Accession

MI0029574

Description

Chrysemys picta cpi-mir-458 precursor miRNA

Sequence

474372 reads, 5191.0 reads per million, 12 experiments

ugcauggugcagauggcAGCGCCAUUUUCAGAGCUAUaaacaguaucauugucAUAGCUCUUUGAAUGGUACUGCcauauguacuggagaauca
.....((((((.(((((((.(((((((..((((((((..(((((...))))).))))))))..))))))).))))))).)))))).........

Structure

----ugcau      g       C       UC        aa     a 
         ggugca auggcAG GCCAUUU  AGAGCUAU  acagu  
         |||||| ||||||| |||||||  ||||||||  ||||| u
         ucaugu uacCGUC UGGUAAG  UCUCGAUA  uguua  
acuaagagg      a       A       UU        -c     c 

Annotation confidence High

Genome context

KK088198.1: 4232485-4232578 [+]

Mature cpi-miR-458-5p

• Accession: MIMAT0037890
• Description: Chrysemys picta cpi-miR-458-5p mature miRNA
• Sequence: 18 - AGCGCCAUUUUCAGAGCUAU - 37
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-458-3p

• Accession: MIMAT0037891
• Description: Chrysemys picta cpi-miR-458-3p mature miRNA
• Sequence: 54 - AUAGCUCUUUGAAUGGUACUGC - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196