Stem-loop cpi-mir-460b

Accession

MI0029577

Description

Chrysemys picta cpi-mir-460b precursor miRNA

Sequence

34324 reads, 352.0 reads per million, 12 experiments

uggcucuauguugUCCUCAUUGUACAUGCUGUGUGuauuuuuauuacauaCACAGCGCAUGCAAUGUGGACauaauggagauca
(((((((((..(((((.(((((((..((((((((((...........))))))))))..))))))).)))))..)))))).)))

Structure

   -      gu     U       CA          auuu 
ugg cucuau  ugUCC CAUUGUA  UGCUGUGUGu    u
||| ||||||  ||||| |||||||  ||||||||||    u
acu gaggua  aCAGG GUAACGU  GCGACACaua    a
   a      au     U       AC          cauu 

Annotation confidence High

Genome context

KK088187.1: 1737377-1737460 [+]

Mature cpi-miR-460b-5p

• Accession: MIMAT0037896
• Description: Chrysemys picta cpi-miR-460b-5p mature miRNA
• Sequence: 14 - UCCUCAUUGUACAUGCUGUGUG - 35
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-460b-3p

• Accession: MIMAT0059172
• Description: Chrysemys picta cpi-miR-460b-3p mature miRNA
• Sequence: 51 - CACAGCGCAUGCAAUGUGGAC - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196