Stem-loop cpi-mir-489

Accession

MI0029578

Description

Chrysemys picta cpi-mir-489 precursor miRNA

Sequence

219135 reads, 2417.0 reads per million, 12 experiments

gugguggcuuggUGGUCGUAUGUAUGACGUCAUUUacuuggacuuuuaggagUGACAUCAUAUGUACGGCUGCUaaacugcugcaugggac
(((((((.(((((((((((((((((((.((((((..(((((....))))))))))).))))))))))))))))))).))))))).......

Structure

-------       c                   C      Ua     a 
       guggugg uuggUGGUCGUAUGUAUGA GUCAUU  cuugg c
       ||||||| ||||||||||||||||||| ||||||  |||||  
       cgucguc aaUCGUCGGCAUGUAUACU CAGUga  ggauu u
cagggua       a                   A      --     u 

Annotation confidence High

Genome context

KK088218.1: 7276665-7276755 [+]

Mature cpi-miR-489-5p

• Accession: MIMAT0037897
• Description: Chrysemys picta cpi-miR-489-5p mature miRNA
• Sequence: 13 - UGGUCGUAUGUAUGACGUCAUUU - 35
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-489-3p

• Accession: MIMAT0037898
• Description: Chrysemys picta cpi-miR-489-3p mature miRNA
• Sequence: 53 - UGACAUCAUAUGUACGGCUGCU - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196