Stem-loop cpi-mir-490

Accession

MI0029579

Description

Chrysemys picta cpi-mir-490 precursor miRNA

Sequence

24130 reads, 252.0 reads per million, 12 experiments

ucauaaguucaugguucgacaCCAUGGAUCUCCAGGUGGGUcaagauuauagagauacACCAACCUGGAGGACUCCAUGCUguugagcuguucacaa
......((..(((((((((((.(((((((((((((((.(((....(((.....)))..))).)))))))))..)))))).)))))))))))..))..

Structure

ucauaa  uc           C      --         G   caag   a 
      gu  augguucgaca CAUGGA  UCUCCAGGU GGU    auu u
      ||  ||||||||||| ||||||  ||||||||| |||    ||| a
      ca  ugucgaguugU GUACCU  GGAGGUCCA CCA    uag g
----aa  cu           C      CA         A   --ca   a 

Annotation confidence Medium

Genome context

KK082981.1: 1092841-1092937 [+]

Mature cpi-miR-490-5p

• Accession: MIMAT0037899
• Description: Chrysemys picta cpi-miR-490-5p mature miRNA
• Sequence: 22 - CCAUGGAUCUCCAGGUGGGU - 41
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-490-3p

• Accession: MIMAT0037900
• Description: Chrysemys picta cpi-miR-490-3p mature miRNA
• Sequence: 59 - ACCAACCUGGAGGACUCCAUGCU - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196