Stem-loop cpi-mir-551-1

Accession

MI0029581

Description

Chrysemys picta cpi-mir-551-1 precursor miRNA

Sequence

796 reads, 9.0 reads per million, 12 experiments

uuuccuguauaugaCCUUGGAAAUCAAGAAUGGGUGGAGccuguugaauuaauucuagGCGACCCAUACUUGGUUUCAagggucagcagggaa
.(((((((...(((((((.(((((((((.((((((...(((((..(((....)))))))).)))))).))))))))).)))))))))))))).

Structure

u       aua       G         A      GGA     uu   u 
 uuccugu   ugaCCUU GAAAUCAAG AUGGGU   Gccug  gaa u
 |||||||   ||||||| ||||||||| ||||||   |||||  |||  
 agggacg   acuggga CUUUGGUUC UACCCA   CGgau  cuu a
a       ---       A         A      --G     --   a 

Annotation confidence Medium

Genome context

chr19: 8963570-8963662 [+]

Mature cpi-miR-551-5p

• Accession: MIMAT0037903
• Description: Chrysemys picta cpi-miR-551-5p mature miRNA
• Sequence: 15 - CCUUGGAAAUCAAGAAUGGGUGGAG - 39
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-551-3p

• Accession: MIMAT0037904
• Description: Chrysemys picta cpi-miR-551-3p mature miRNA
• Sequence: 59 - GCGACCCAUACUUGGUUUCA - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196